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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AB406_0896Hypothetical protein. (468 aa)    
Predicted Functional Partners:
fepA-2
Ferrienterobactin receptor precursor.
     0.952
pfeA
Ferric enterobactin receptor precursor.
   
 0.820
phoD
Alkaline phosphatase D precursor.
 
     0.731
yhdJ
DNA adenine methyltransferase YhdJ; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.731
AB406_1464
Tonb-dependent receptor plug.
  
 
   0.713
AB406_1183
Hypothetical protein.
  
     0.693
fepA
Ferrienterobactin receptor precursor.
  
     0.683
btuB-2
Vitamin B12 transporter BtuB precursor.
  
 
   0.652
AB406_1465
Hypothetical protein.
  
 
 
 0.650
AB406_0184
Glycan metabolism protein RagB.
  
 
 
 0.618
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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