STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
algAAlginate biosynthesis protein AlgA. (362 aa)    
Predicted Functional Partners:
manC1
Mannose-1-phosphate guanylyltransferase 1.
     0.960
algC
Phosphomannomutase/phosphoglucomutase.
 
 
 0.956
AB406_1140
Hypothetical protein.
       0.821
comM
Competence protein ComM.
       0.642
ptk
Tyrosine-protein kinase ptk.
 
  
 0.608
ywqD
Tyrosine-protein kinase YwqD.
 
  
 0.602
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
  
  
 0.573
ctc
General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
       0.548
AB406_2101
Glycogen synthase.
 
  
 0.458
prs
Ribose-phosphate pyrophosphokinase.
       0.437
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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