STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaDPutative 1,2-phenylacetyl-CoA epoxidase, subunit D. (109 aa)    
Predicted Functional Partners:
csd
Putative cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 0.932
sufC
Putative ATP-dependent transporter SufC.
  
 0.924
sufB
FeS cluster assembly protein SufB.
   
 0.888
sufD
FeS cluster assembly protein SufD.
   
 0.854
sufE
Cysteine desulfuration protein SufE.
      0.813
AB406_1385
Hypothetical protein.
       0.737
spmA
Spore maturation protein A.
       0.737
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
  
  
 0.651
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
  
 0.548
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.488
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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