Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
AB406_1390Hypothetical protein. (152 aa)    
Predicted Functional Partners:
fixN
Cytochrome c oxidase subunit 1 like protein, bacteroid; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.997
yccM
Putative electron transport protein YccM.
 
  
 0.953
ccoP
Cbb3-type cytochrome c oxidase subunit CcoP.
 
 
 0.949
AB406_1389
Cytochrome biogenesis protein CycZ.
 
     0.933
copA
Putative copper-importing P-type ATPase A.
 
  
 0.865
AB406_1393
Hypothetical protein.
  
  
 0.744
AB406_1395
Cbb3-type cytochrome oxidase maturation protein.
  
  
 0.644
cycA
Cytochrome c2 precursor.
  
   0.600
AB406_2308
Phospholipid/glycerol acyltransferase.
  
     0.584
AB406_1037
Hypothetical protein.
  
     0.563
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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