STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wbbLN-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase. (325 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
 
    0.850
AB406_1844
Lipid a biosynthesis acyltransferase.
  
  
 0.835
zntR
HTH-type transcriptional regulator ZntR.
 
     0.657
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.646
AB406_1843
Hypothetical protein.
       0.547
AB406_1847
Hypothetical protein.
       0.503
AB406_1848
Hypothetical protein.
       0.502
ptk
Tyrosine-protein kinase ptk.
  
  
 0.470
ywqD
Tyrosine-protein kinase YwqD.
  
  
 0.470
AB406_2113
Hypothetical protein.
 
     0.469
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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