STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pipProline iminopeptidase. (276 aa)    
Predicted Functional Partners:
AB406_0148
Proline dehydrogenase.
     
  0.900
AB406_0036
Hypothetical protein.
  
     0.709
AB406_0037
Hypothetical protein.
  
     0.671
AB406_0034
Hypothetical protein.
  
     0.649
AB406_0023
Hypothetical protein.
  
 
   0.628
AB406_0979
Hypothetical protein.
  
     0.603
AB406_0221
Relaxase/mobilization nuclease domain protein.
 
     0.580
AB406_0974
Hypothetical protein.
  
     0.528
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
 
 
 0.480
AB406_1854
Hypothetical protein.
       0.412
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.