STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfdHBactoprenol glucosyl transferase like protein from prophage CPS-53. (309 aa)    
Predicted Functional Partners:
pdaA
Peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor.
  
  
 0.799
AB406_2101
Glycogen synthase.
  
   0.792
AB406_2104
Hypothetical protein.
 
     0.791
dapD
2,3,4,5-tetrahydropyridine-2, 6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
       0.742
mepS-2
Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor.
  
    0.718
AB406_1338
naD-dependent epimerase/dehydratase.
 
   0.581
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
       0.540
AB406_2107
Hypothetical protein.
       0.448
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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