Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AB406_2129Hypothetical protein. (356 aa)    
Predicted Functional Partners:
sigV
RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.752
AB406_2128
Hypothetical protein.
       0.712
AB406_1309
Hypothetical protein.
  
     0.587
AB406_1900
Hypothetical protein.
  
     0.587
AB406_2130
Hypothetical protein; Belongs to the UPF0312 family.
       0.570
AB406_0778
N-Dimethylarginine dimethylaminohydrolase.
  
     0.483
AB406_0601
Hypothetical protein.
  
     0.480
wprA
Cell wall-associated protease precursor; Belongs to the peptidase S8 family.
  
    0.437
AB406_1873
Hypothetical protein.
  
     0.430
AB406_2125
Wbqc-like family protein.
  
    0.427
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.