Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AB406_2157Hypothetical protein. (244 aa)    
Predicted Functional Partners:
AB406_2156
Gliding motility ABC transporter auxiliary protein.
  
 0.996
yxlF
Putative ABC transporter ATP-binding protein YxlF.
 
 0.900
AB406_2162
Gliding motility protein gldj.
 
     0.789
AB406_2158
Hypothetical protein.
       0.770
salL
Adenosyl-chloride synthase.
       0.703
AB406_1459
Hypothetical protein.
  
     0.688
AB406_1531
Hypothetical protein.
  
   
 0.630
yxlF-2
Putative ABC transporter ATP-binding protein YxlF.
 
 0.630
ybhF
Putative ABC transporter ATP-binding protein YbhF.
  
 0.578
AB406_0293
Hypothetical protein.
  
     0.566
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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