STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacCD-alanyl-D-alanine carboxypeptidase DacC precursor. (468 aa)    
Predicted Functional Partners:
kinD
Sporulation kinase D.
  
    0.761
spoVD
Stage V sporulation protein D.
  
  
 0.622
pbpG
Penicillin-binding protein 2D; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
     
 0.563
mrcA
Penicillin-binding protein 1A.
     
 0.544
AB406_2171
Hypothetical protein.
       0.528
yiaD-3
Putative lipoprotein YiaD precursor.
       0.525
ykfA
Putative murein peptide carboxypeptidase.
 
   
 0.479
AB406_2173
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
       0.454
dprE1
Putative decaprenylphosphoryl-beta-D-ribose oxidase.
       0.454
AB406_2175
Hypothetical protein.
       0.441
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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