STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AB406_2296Phosphoesterase pa-phosphatase-like protein. (277 aa)    
Predicted Functional Partners:
eptA
Phosphoethanolamine transferase EptA.
   
 0.991
yhfT
Putative acyl--CoA ligase YhfT.
    
 0.630
AB406_1054
Hypothetical protein.
 
     0.629
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.621
AB406_1052
Hypothetical protein.
 
     0.566
AB406_0470
Hypothetical protein.
  
     0.533
AB406_2104
Hypothetical protein.
 
     0.511
AB406_2297
Hypothetical protein.
       0.503
yhbX
Putative phosphoethanolamine transferase YhbX.
   
 0.474
pdaA
Peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor.
 
     0.469
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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