STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AB406_2371HlyD family secretion protein. (230 aa)    
Predicted Functional Partners:
AB406_2370
Putative outer membrane efflux protein precursor.
 
 
 0.960
ybhR
Inner membrane transport permease YbhR.
 
  
 0.928
AB406_1311
Outer membrane efflux protein.
 
 
 0.730
AB406_1902
Outer membrane efflux protein.
 
 
 0.730
tolC
Outer membrane protein TolC precursor.
 
 
 0.728
ohrR
Organic hydroperoxide resistance transcriptional regulator.
 
  
 0.672
oprM
Outer membrane protein OprM precursor.
  
 
 0.661
lolD
Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 
 0.552
AB406_0770
Hypothetical protein.
 
 
 0.483
tetA
Tetracycline resistance protein, class C.
 
 
 0.468
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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