STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL42338.1Hypothetical protein. (219 aa)    
Predicted Functional Partners:
SDL42271.1
Hypothetical protein.
  
 0.979
SDL42300.1
Hypothetical protein.
  
 0.944
SDM08991.1
Beta-barrel assembly machine subunit BamD.
   
 
 0.893
SDL42248.1
Outer membrane cobalamin receptor protein.
 
    0.881
SDL42366.1
Hypothetical protein.
  
    0.782
SDL39358.1
Protein of unknown function.
 
    0.755
SDL41238.1
Surface antigen.
  
   0.664
SDM28519.1
Surface antigen.
  
   0.662
SDM85898.1
Surface antigen.
  
   0.656
SDL98030.1
Surface antigen.
  
   0.655
Your Current Organism:
Pedobacter antarcticus
NCBI taxonomy Id: 34086
Other names: ATCC 51969, CIP 104195 [[Pedobacter piscium]], DSM 11725 [[Pedobacter piscium]], IFO 14985 [[Pedobacter piscium]], JCM 7454 [[Pedobacter piscium]], KCTC 12489 [[Pedobacter piscium]], LMG 14024 [[Pedobacter piscium]], LMG:14024 [[Pedobacter piscium]], MTCC 675, NBRC 14985 [[Pedobacter piscium]], NCIMB 13704 [[Pedobacter piscium]], P. antarcticus, Pedobacter piscium, Sphingobacterium antarcticum, Sphingobacterium antarcticus, Sphingobacterium piscium, strain 4BY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.