Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL48674.1 | SDL48739.1 | SAMN04488084_101451 | SAMN04488084_101453 | Predicted amidohydrolase. | 3-hydroxybutyryl-CoA dehydrogenase. | 0.669 |
SDL48674.1 | SDL51237.1 | SAMN04488084_101451 | SAMN04488084_101535 | Predicted amidohydrolase. | Glutamate synthase (NADPH/NADH) large chain. | 0.778 |
SDL48674.1 | SDL75961.1 | SAMN04488084_101451 | SAMN04488084_102363 | Predicted amidohydrolase. | Allosteric NADP-dependent malic enzyme. | 0.589 |
SDL48674.1 | SDM28359.1 | SAMN04488084_101451 | SAMN04488084_105115 | Predicted amidohydrolase. | Amino acid adenylation domain-containing protein. | 0.439 |
SDL48674.1 | SDM31816.1 | SAMN04488084_101451 | SAMN04488084_105247 | Predicted amidohydrolase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.521 |
SDL48674.1 | SDM36713.1 | SAMN04488084_101451 | SAMN04488084_10647 | Predicted amidohydrolase. | L-lysine 6-transaminase precursor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.452 |
SDL48674.1 | SDM58350.1 | SAMN04488084_101451 | SAMN04488084_10918 | Predicted amidohydrolase. | Protein N-acetyltransferase, RimJ/RimL family. | 0.451 |
SDL48674.1 | pdxH | SAMN04488084_101451 | SAMN04488084_101454 | Predicted amidohydrolase. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.548 |
SDL48674.1 | purL | SAMN04488084_101451 | SAMN04488084_101227 | Predicted amidohydrolase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.504 |
SDL48674.1 | ruvB | SAMN04488084_101451 | SAMN04488084_101452 | Predicted amidohydrolase. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.670 |
SDL48739.1 | SDL48674.1 | SAMN04488084_101453 | SAMN04488084_101451 | 3-hydroxybutyryl-CoA dehydrogenase. | Predicted amidohydrolase. | 0.669 |
SDL48739.1 | SDL51237.1 | SAMN04488084_101453 | SAMN04488084_101535 | 3-hydroxybutyryl-CoA dehydrogenase. | Glutamate synthase (NADPH/NADH) large chain. | 0.443 |
SDL48739.1 | SDL75961.1 | SAMN04488084_101453 | SAMN04488084_102363 | 3-hydroxybutyryl-CoA dehydrogenase. | Allosteric NADP-dependent malic enzyme. | 0.564 |
SDL48739.1 | SDM28359.1 | SAMN04488084_101453 | SAMN04488084_105115 | 3-hydroxybutyryl-CoA dehydrogenase. | Amino acid adenylation domain-containing protein. | 0.459 |
SDL48739.1 | pdxH | SAMN04488084_101453 | SAMN04488084_101454 | 3-hydroxybutyryl-CoA dehydrogenase. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.791 |
SDL48739.1 | ruvB | SAMN04488084_101453 | SAMN04488084_101452 | 3-hydroxybutyryl-CoA dehydrogenase. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.836 |
SDL51237.1 | SDL48674.1 | SAMN04488084_101535 | SAMN04488084_101451 | Glutamate synthase (NADPH/NADH) large chain. | Predicted amidohydrolase. | 0.778 |
SDL51237.1 | SDL48739.1 | SAMN04488084_101535 | SAMN04488084_101453 | Glutamate synthase (NADPH/NADH) large chain. | 3-hydroxybutyryl-CoA dehydrogenase. | 0.443 |
SDL51237.1 | SDL75961.1 | SAMN04488084_101535 | SAMN04488084_102363 | Glutamate synthase (NADPH/NADH) large chain. | Allosteric NADP-dependent malic enzyme. | 0.582 |
SDL51237.1 | SDM28359.1 | SAMN04488084_101535 | SAMN04488084_105115 | Glutamate synthase (NADPH/NADH) large chain. | Amino acid adenylation domain-containing protein. | 0.962 |
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