STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL66037.1ATP-binding cassette, subfamily B. (596 aa)    
Predicted Functional Partners:
SDM04583.1
ATP-binding cassette, subfamily B.
 
  
 
0.908
SDL66062.1
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
   0.722
SDL66003.1
Protein of unknown function.
       0.714
SDL66096.1
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
    0.658
SDM28330.1
Amino acid adenylation domain-containing protein.
  
 
 0.652
SDL53618.1
ATP-binding cassette, subfamily B.
  
 
 
0.624
SDM91546.1
ATP-binding cassette, subfamily B.
  
 
 
0.621
SDL66164.1
Preprotein translocase subunit YajC.
       0.589
SDL46546.1
ABC transporter transmembrane region.
 
  
  0.587
SDL75197.1
ATP-binding cassette, subfamily B.
 
  
 
0.579
Your Current Organism:
Pedobacter antarcticus
NCBI taxonomy Id: 34086
Other names: ATCC 51969, CIP 104195 [[Pedobacter piscium]], DSM 11725 [[Pedobacter piscium]], IFO 14985 [[Pedobacter piscium]], JCM 7454 [[Pedobacter piscium]], KCTC 12489 [[Pedobacter piscium]], LMG 14024 [[Pedobacter piscium]], LMG:14024 [[Pedobacter piscium]], MTCC 675, NBRC 14985 [[Pedobacter piscium]], NCIMB 13704 [[Pedobacter piscium]], P. antarcticus, Pedobacter piscium, Sphingobacterium antarcticum, Sphingobacterium antarcticus, Sphingobacterium piscium, strain 4BY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.