Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL78877.1 | SDL78909.1 | SAMN04488084_102460 | SAMN04488084_102461 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.743 |
SDL78877.1 | SDL78942.1 | SAMN04488084_102460 | SAMN04488084_102462 | RNA polymerase sigma-70 factor, ECF subfamily. | Transcriptional regulator, TetR family. | 0.477 |
SDL78909.1 | SDL78877.1 | SAMN04488084_102461 | SAMN04488084_102460 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.743 |
SDL78909.1 | SDL78942.1 | SAMN04488084_102461 | SAMN04488084_102462 | Hypothetical protein. | Transcriptional regulator, TetR family. | 0.489 |
SDL78942.1 | SDL78877.1 | SAMN04488084_102462 | SAMN04488084_102460 | Transcriptional regulator, TetR family. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.477 |
SDL78942.1 | SDL78909.1 | SAMN04488084_102462 | SAMN04488084_102461 | Transcriptional regulator, TetR family. | Hypothetical protein. | 0.489 |
SDL78942.1 | SDL78969.1 | SAMN04488084_102462 | SAMN04488084_102463 | Transcriptional regulator, TetR family. | Serine palmitoyltransferase. | 0.506 |
SDL78942.1 | SDL79003.1 | SAMN04488084_102462 | SAMN04488084_102464 | Transcriptional regulator, TetR family. | Nucleoside-diphosphate-sugar epimerase. | 0.449 |
SDL78942.1 | SDL79095.1 | SAMN04488084_102462 | SAMN04488084_102467 | Transcriptional regulator, TetR family. | Protein of unknown function. | 0.411 |
SDL78942.1 | SDM16832.1 | SAMN04488084_102462 | SAMN04488084_104144 | Transcriptional regulator, TetR family. | Capsule assembly protein Wzi. | 0.537 |
SDL78942.1 | SDM71104.1 | SAMN04488084_102462 | SAMN04488084_1126 | Transcriptional regulator, TetR family. | Protein of unknown function. | 0.425 |
SDL78942.1 | SDM88017.1 | SAMN04488084_102462 | SAMN04488084_11717 | Transcriptional regulator, TetR family. | Transcriptional regulator, TetR family. | 0.553 |
SDL78969.1 | SDL78942.1 | SAMN04488084_102463 | SAMN04488084_102462 | Serine palmitoyltransferase. | Transcriptional regulator, TetR family. | 0.506 |
SDL78969.1 | SDL79003.1 | SAMN04488084_102463 | SAMN04488084_102464 | Serine palmitoyltransferase. | Nucleoside-diphosphate-sugar epimerase. | 0.823 |
SDL78969.1 | SDL79095.1 | SAMN04488084_102463 | SAMN04488084_102467 | Serine palmitoyltransferase. | Protein of unknown function. | 0.579 |
SDL79003.1 | SDL78942.1 | SAMN04488084_102464 | SAMN04488084_102462 | Nucleoside-diphosphate-sugar epimerase. | Transcriptional regulator, TetR family. | 0.449 |
SDL79003.1 | SDL78969.1 | SAMN04488084_102464 | SAMN04488084_102463 | Nucleoside-diphosphate-sugar epimerase. | Serine palmitoyltransferase. | 0.823 |
SDL79003.1 | SDL79095.1 | SAMN04488084_102464 | SAMN04488084_102467 | Nucleoside-diphosphate-sugar epimerase. | Protein of unknown function. | 0.829 |
SDL79095.1 | SDL78942.1 | SAMN04488084_102467 | SAMN04488084_102462 | Protein of unknown function. | Transcriptional regulator, TetR family. | 0.411 |
SDL79095.1 | SDL78969.1 | SAMN04488084_102467 | SAMN04488084_102463 | Protein of unknown function. | Serine palmitoyltransferase. | 0.579 |
page 1 of 2