Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM08263.1 | SDM13596.1 | SAMN04488084_103527 | SAMN04488084_10418 | dCMP deaminase. | Dihydrofolate reductase. | 0.420 |
SDM08263.1 | dut | SAMN04488084_103527 | SAMN04488084_104105 | dCMP deaminase. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.925 |
SDM08263.1 | tdk | SAMN04488084_103527 | SAMN04488084_103442 | dCMP deaminase. | Thymidine kinase. | 0.953 |
SDM08263.1 | thyA | SAMN04488084_103527 | SAMN04488084_10242 | dCMP deaminase. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.917 |
SDM13565.1 | SDM13596.1 | SAMN04488084_10417 | SAMN04488084_10418 | O-6-methylguanine DNA methyltransferase. | Dihydrofolate reductase. | 0.540 |
SDM13565.1 | SDM13621.1 | SAMN04488084_10417 | SAMN04488084_10419 | O-6-methylguanine DNA methyltransferase. | Transcriptional regulator, AraC family. | 0.506 |
SDM13565.1 | SDM13649.1 | SAMN04488084_10417 | SAMN04488084_10420 | O-6-methylguanine DNA methyltransferase. | Predicted Zn-dependent protease. | 0.506 |
SDM13596.1 | SDM08263.1 | SAMN04488084_10418 | SAMN04488084_103527 | Dihydrofolate reductase. | dCMP deaminase. | 0.420 |
SDM13596.1 | SDM13565.1 | SAMN04488084_10418 | SAMN04488084_10417 | Dihydrofolate reductase. | O-6-methylguanine DNA methyltransferase. | 0.540 |
SDM13596.1 | SDM13621.1 | SAMN04488084_10418 | SAMN04488084_10419 | Dihydrofolate reductase. | Transcriptional regulator, AraC family. | 0.773 |
SDM13596.1 | SDM13649.1 | SAMN04488084_10418 | SAMN04488084_10420 | Dihydrofolate reductase. | Predicted Zn-dependent protease. | 0.773 |
SDM13596.1 | SDM14472.1 | SAMN04488084_10418 | SAMN04488084_10456 | Dihydrofolate reductase. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.641 |
SDM13596.1 | SDM55345.1 | SAMN04488084_10418 | SAMN04488084_10879 | Dihydrofolate reductase. | Dihydropteroate synthase. | 0.406 |
SDM13596.1 | dut | SAMN04488084_10418 | SAMN04488084_104105 | Dihydrofolate reductase. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.406 |
SDM13596.1 | glyA | SAMN04488084_10418 | SAMN04488084_104114 | Dihydrofolate reductase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.411 |
SDM13596.1 | tdk | SAMN04488084_10418 | SAMN04488084_103442 | Dihydrofolate reductase. | Thymidine kinase. | 0.432 |
SDM13596.1 | thyA | SAMN04488084_10418 | SAMN04488084_10242 | Dihydrofolate reductase. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.799 |
SDM13621.1 | SDM13565.1 | SAMN04488084_10419 | SAMN04488084_10417 | Transcriptional regulator, AraC family. | O-6-methylguanine DNA methyltransferase. | 0.506 |
SDM13621.1 | SDM13596.1 | SAMN04488084_10419 | SAMN04488084_10418 | Transcriptional regulator, AraC family. | Dihydrofolate reductase. | 0.773 |
SDM13621.1 | SDM13649.1 | SAMN04488084_10419 | SAMN04488084_10420 | Transcriptional regulator, AraC family. | Predicted Zn-dependent protease. | 0.773 |
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