STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM26867.1Peroxiredoxin. (439 aa)    
Predicted Functional Partners:
SDM26891.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
 
     0.725
SDM26969.1
Protein of unknown function.
 
     0.724
SDM26844.1
Peroxiredoxin.
 
    
0.638
SDM26917.1
Cytochrome c peroxidase.
 
     0.571
SDM26769.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.563
SDM26939.1
Iron complex outermembrane recepter protein.
 
     0.542
SDL36415.1
Hypothetical protein.
  
     0.538
SDL40818.1
Starch-binding associating with outer membrane.
  
    0.449
SDL52549.1
Hypothetical protein.
  
     0.449
SDM03009.1
Hypothetical protein.
  
 
   0.418
Your Current Organism:
Pedobacter antarcticus
NCBI taxonomy Id: 34086
Other names: ATCC 51969, CIP 104195 [[Pedobacter piscium]], DSM 11725 [[Pedobacter piscium]], IFO 14985 [[Pedobacter piscium]], JCM 7454 [[Pedobacter piscium]], KCTC 12489 [[Pedobacter piscium]], LMG 14024 [[Pedobacter piscium]], LMG:14024 [[Pedobacter piscium]], MTCC 675, NBRC 14985 [[Pedobacter piscium]], NCIMB 13704 [[Pedobacter piscium]], P. antarcticus, Pedobacter piscium, Sphingobacterium antarcticum, Sphingobacterium antarcticus, Sphingobacterium piscium, strain 4BY
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