STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM56134.1Starch-binding associating with outer membrane. (504 aa)    
Predicted Functional Partners:
SDM56160.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.972
SDM56108.1
Hypothetical protein.
 
     0.885
SDL42951.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.781
SDM62960.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.766
SDM56065.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.764
SDM56088.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
    
  0.751
SDM73530.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.744
SDM02420.1
Iron complex outermembrane recepter protein.
  
 
   0.739
SDM54967.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.716
SDM56181.1
Y_Y_Y domain-containing protein.
 
     0.678
Your Current Organism:
Pedobacter antarcticus
NCBI taxonomy Id: 34086
Other names: ATCC 51969, CIP 104195 [[Pedobacter piscium]], DSM 11725 [[Pedobacter piscium]], IFO 14985 [[Pedobacter piscium]], JCM 7454 [[Pedobacter piscium]], KCTC 12489 [[Pedobacter piscium]], LMG 14024 [[Pedobacter piscium]], LMG:14024 [[Pedobacter piscium]], MTCC 675, NBRC 14985 [[Pedobacter piscium]], NCIMB 13704 [[Pedobacter piscium]], P. antarcticus, Pedobacter piscium, Sphingobacterium antarcticum, Sphingobacterium antarcticus, Sphingobacterium piscium, strain 4BY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.