STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAD-xylose isomerase; Belongs to the xylose isomerase family. (443 aa)    
Predicted Functional Partners:
SDM80827.1
Xylulokinase.
 
 
 0.996
SDM86724.1
Fructokinase.
     
 0.883
SDL77214.1
Glucokinase.
    
 0.882
SDL71313.1
ROK family protein (putative glucokinase).
    
 0.843
SDM86754.1
Fructan beta-fructosidase; Belongs to the glycosyl hydrolase 32 family.
     
 0.831
SDL76401.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
     
 0.799
SDM80890.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.775
SDL44943.1
Gluconate kinase, FGGY family; Belongs to the FGGY kinase family.
 
 
 0.658
SDL56423.1
Fructokinase.
     
 0.627
SDL43243.1
Sugar (pentulose or hexulose) kinase.
 
 
 0.558
Your Current Organism:
Pedobacter antarcticus
NCBI taxonomy Id: 34086
Other names: ATCC 51969, CIP 104195 [[Pedobacter piscium]], DSM 11725 [[Pedobacter piscium]], IFO 14985 [[Pedobacter piscium]], JCM 7454 [[Pedobacter piscium]], KCTC 12489 [[Pedobacter piscium]], LMG 14024 [[Pedobacter piscium]], LMG:14024 [[Pedobacter piscium]], MTCC 675, NBRC 14985 [[Pedobacter piscium]], NCIMB 13704 [[Pedobacter piscium]], P. antarcticus, Pedobacter piscium, Sphingobacterium antarcticum, Sphingobacterium antarcticus, Sphingobacterium piscium, strain 4BY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.