STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB74412.1Tetratricopeptide repeat-containing protein. (910 aa)    
Predicted Functional Partners:
SFB79520.1
Beta-barrel assembly machine subunit BamA.
 
 
 0.959
SFB90043.1
Biopolymer transport protein ExbB.
 
  
 0.791
SFB96826.1
Hypothetical protein.
  
  
 0.736
SFB83473.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.678
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.658
SFB69647.1
ComEC/Rec2-related protein.
 
   
 0.628
SFB71098.1
Tetratricopeptide repeat-containing protein.
     
 0.610
ligA
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.600
SFB67332.1
Tfp pilus assembly protein PilF.
  
  
 0.569
yidC
60Kd inner membrane protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
   
 0.558
Your Current Organism:
Brevinema andersonii
NCBI taxonomy Id: 34097
Other names: ATCC 43811, B. andersonii, strain CT11616
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.