Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFB67242.1 | SFB78858.1 | SAMN02745150_00040 | SAMN02745150_00811 | G/U mismatch-specific uracil-DNA glycosylase. | Exodeoxyribonuclease-3. | 0.963 |
| SFB67242.1 | polA | SAMN02745150_00040 | SAMN02745150_00259 | G/U mismatch-specific uracil-DNA glycosylase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.499 |
| SFB67323.1 | SFB67728.1 | SAMN02745150_00048 | SAMN02745150_00098 | A/G-specific DNA-adenine glycosylase. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.527 |
| SFB67323.1 | SFB78858.1 | SAMN02745150_00048 | SAMN02745150_00811 | A/G-specific DNA-adenine glycosylase. | Exodeoxyribonuclease-3. | 0.981 |
| SFB67323.1 | SFB78877.1 | SAMN02745150_00048 | SAMN02745150_00812 | A/G-specific DNA-adenine glycosylase. | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | 0.547 |
| SFB67323.1 | nth | SAMN02745150_00048 | SAMN02745150_00291 | A/G-specific DNA-adenine glycosylase. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.776 |
| SFB67323.1 | polA | SAMN02745150_00048 | SAMN02745150_00259 | A/G-specific DNA-adenine glycosylase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.454 |
| SFB67728.1 | SFB67323.1 | SAMN02745150_00098 | SAMN02745150_00048 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | A/G-specific DNA-adenine glycosylase. | 0.527 |
| SFB67728.1 | SFB78858.1 | SAMN02745150_00098 | SAMN02745150_00811 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Exodeoxyribonuclease-3. | 0.982 |
| SFB67728.1 | polA | SAMN02745150_00098 | SAMN02745150_00259 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.998 |
| SFB67728.1 | topA | SAMN02745150_00098 | SAMN02745150_00101 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.901 |
| SFB78840.1 | SFB78858.1 | SAMN02745150_00810 | SAMN02745150_00811 | Hypothetical protein. | Exodeoxyribonuclease-3. | 0.773 |
| SFB78840.1 | SFB78877.1 | SAMN02745150_00810 | SAMN02745150_00812 | Hypothetical protein. | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | 0.773 |
| SFB78840.1 | proS | SAMN02745150_00810 | SAMN02745150_00809 | Hypothetical protein. | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] | 0.658 |
| SFB78858.1 | SFB67242.1 | SAMN02745150_00811 | SAMN02745150_00040 | Exodeoxyribonuclease-3. | G/U mismatch-specific uracil-DNA glycosylase. | 0.963 |
| SFB78858.1 | SFB67323.1 | SAMN02745150_00811 | SAMN02745150_00048 | Exodeoxyribonuclease-3. | A/G-specific DNA-adenine glycosylase. | 0.981 |
| SFB78858.1 | SFB67728.1 | SAMN02745150_00811 | SAMN02745150_00098 | Exodeoxyribonuclease-3. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.982 |
| SFB78858.1 | SFB78840.1 | SAMN02745150_00811 | SAMN02745150_00810 | Exodeoxyribonuclease-3. | Hypothetical protein. | 0.773 |
| SFB78858.1 | SFB78877.1 | SAMN02745150_00811 | SAMN02745150_00812 | Exodeoxyribonuclease-3. | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | 0.964 |
| SFB78858.1 | SFB89782.1 | SAMN02745150_00811 | SAMN02745150_01231 | Exodeoxyribonuclease-3. | Cytosine deaminase. | 0.947 |
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