STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ01709.1Putative Zn-dependent protease, contains TPR repeats. (475 aa)    
Predicted Functional Partners:
SIQ01672.1
Hypothetical protein.
       0.773
SIQ73299.1
Peptidase family M48.
  
   
 0.741
SIQ01622.1
TIGR00266 family protein.
       0.572
SIQ01752.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.543
SIR99730.1
Hemolysin-type calcium-binding repeat-containing protein.
   
 
 0.415
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.