STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PilBType IV pilus assembly protein PilB. (560 aa)    
Predicted Functional Partners:
SIP96648.1
Type IV pilus assembly protein PilC.
 
 0.965
GspF
General secretion pathway protein F.
 
 0.911
SIR62456.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.858
SIS03573.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
  
     0.775
SIR85040.1
Type II secretion system protein L (GspL).
  
 
 0.747
SIR85350.1
Type IV pilus assembly protein PilM.
 
 
 
 0.721
GspG
Type II secretion system protein G (GspG).
 
 
 0.701
SIR85433.1
Type IV pilus assembly protein PilQ.
 
 
 
 0.649
SIS03613.1
Competence protein ComEC.
  
  
 0.602
GspI
Type II secretion system protein I (GspI).
  
 
 0.516
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.