STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIP98396.1N-acetylglucosaminyl deacetylase, LmbE family. (216 aa)    
Predicted Functional Partners:
SIP98299.1
Aminopeptidase-like domain-containing protein.
 
     0.952
SIP98165.1
Methyltransferase domain-containing protein.
 
     0.951
SIP98344.1
Glucose-1-phosphate cytidylyltransferase.
 
  
 0.950
SIP98256.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
     0.863
RfbG
CDP-glucose 4,6-dehydratase.
 
    0.821
SIP98435.1
Benzil reductase ((S)-benzoin forming).
     
 0.777
SIP98128.1
Glycosyl transferase family 2.
     
 0.704
SIR55378.1
Nucleoside-diphosphate-sugar epimerase.
 
    0.615
SIR25531.1
Acyl transferase domain-containing protein.
  
  
 0.488
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
     
 0.440
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
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