STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR05760.1TRAP-type C4-dicarboxylate transport system, small permease component. (162 aa)    
Predicted Functional Partners:
SIR05707.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
 0.995
SIR05799.1
TRAP transporter, DctM subunit.
 
 
 0.965
SIR05856.1
Uronate dehydrogenase.
 
     0.818
SIR05910.1
Gluconolactonase.
 
     0.737
SIR05963.1
2-keto-3-deoxygluconate kinase.
 
     0.710
SIS01491.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.685
SIR36270.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.662
SIS10014.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.654
SIR36312.1
TRAP transporter, DctM subunit.
 
 
 0.653
SIS01401.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.639
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.