STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR07075.1Transcriptional regulator, MarR family. (169 aa)    
Predicted Functional Partners:
SIR07125.1
Transcriptional regulator, HxlR family.
  
  
 0.770
SIR07013.1
Vanillate O-demethylase monooxygenase subunit.
 
     0.655
SIQ01090.1
trans-feruloyl-CoA synthase.
  
     0.592
SIR23738.1
Transcriptional regulator, MarR family.
  
     0.557
SIR87696.1
feruloyl-CoA synthase.
  
     0.556
SIR07181.1
NAD(P)H dehydrogenase (quinone).
       0.551
SIR06966.1
Vanillate O-demethylase ferredoxin subunit.
       0.517
SIR23083.1
Protein of unknown function; Belongs to the UPF0311 family.
  
  
 0.490
SIQ31272.1
Hypothetical protein.
  
     0.460
SIR01935.1
Initiator Replication protein.
  
     0.449
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.