Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SIR00142.1 | SIR25495.1 | SAMN05421778_10645 | SAMN05421778_10855 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | Amino acid adenylation domain-containing protein. | 0.696 |
| SIR00142.1 | YlqF | SAMN05421778_10645 | SAMN05421778_11270 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.819 |
| SIR00142.1 | atpD | SAMN05421778_10645 | SAMN05421778_10418 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.714 |
| SIR00142.1 | atpG | SAMN05421778_10645 | SAMN05421778_10419 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | ATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.708 |
| SIR00142.1 | fusA | SAMN05421778_10645 | SAMN05421778_116107 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.792 |
| SIR00142.1 | nnrD | SAMN05421778_10645 | SAMN05421778_1275 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specif [...] | 0.769 |
| SIR00142.1 | rplC | SAMN05421778_10645 | SAMN05421778_104186 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.801 |
| SIR00142.1 | rplM | SAMN05421778_10645 | SAMN05421778_11912 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.770 |
| SIR00142.1 | rplO | SAMN05421778_10645 | SAMN05421778_12320 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.716 |
| SIR00142.1 | rplX | SAMN05421778_10645 | SAMN05421778_12328 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.746 |
| SIR25495.1 | SIR00142.1 | SAMN05421778_10855 | SAMN05421778_10645 | Amino acid adenylation domain-containing protein. | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | 0.696 |
| SIR25495.1 | YlqF | SAMN05421778_10855 | SAMN05421778_11270 | Amino acid adenylation domain-containing protein. | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.709 |
| SIR25495.1 | atpD | SAMN05421778_10855 | SAMN05421778_10418 | Amino acid adenylation domain-containing protein. | ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.568 |
| SIR25495.1 | atpG | SAMN05421778_10855 | SAMN05421778_10419 | Amino acid adenylation domain-containing protein. | ATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.704 |
| SIR25495.1 | fusA | SAMN05421778_10855 | SAMN05421778_116107 | Amino acid adenylation domain-containing protein. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.450 |
| SIR25495.1 | nnrD | SAMN05421778_10855 | SAMN05421778_1275 | Amino acid adenylation domain-containing protein. | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specif [...] | 0.489 |
| SIR25495.1 | rplC | SAMN05421778_10855 | SAMN05421778_104186 | Amino acid adenylation domain-containing protein. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.985 |
| SIR25495.1 | rplM | SAMN05421778_10855 | SAMN05421778_11912 | Amino acid adenylation domain-containing protein. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.984 |
| SIR25495.1 | rplO | SAMN05421778_10855 | SAMN05421778_12320 | Amino acid adenylation domain-containing protein. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.977 |
| SIR25495.1 | rplX | SAMN05421778_10855 | SAMN05421778_12328 | Amino acid adenylation domain-containing protein. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.977 |
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