STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR24830.1Peptide/nickel transport system permease protein. (319 aa)    
Predicted Functional Partners:
SIR24868.1
Peptide/nickel transport system permease protein.
  
 0.990
SIR24733.1
Peptide/nickel transport system substrate-binding protein.
 
 0.976
SIR24905.1
Peptide/nickel transport system ATP-binding protein.
  
 0.976
SIQ24706.1
Peptide/nickel transport system permease protein.
  
 0.970
SIQ73544.1
ABC-type transport system, substrate-binding protein.
 
 
 0.893
SIQ24760.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.879
SIR24940.1
Outer membrane transport energization protein ExbB.
       0.623
SIR24983.1
Outer membrane transport energization protein ExbD.
       0.623
SIR25032.1
Outer membrane transport energization protein ExbD.
       0.598
SIR25071.1
Protein TonB.
     
 0.578
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.