STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR41268.1Diguanylate cyclase (GGDEF) domain-containing protein. (550 aa)    
Predicted Functional Partners:
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
  
 0.878
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.857
SIQ46835.1
Response regulator receiver domain-containing protein.
 
  
 0.838
SIS09334.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.834
SIQ41447.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.797
SIR69046.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
  
 0.794
SIS02766.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.783
SIR36648.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.749
SIR37713.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 
0.746
SIR56995.1
PAS domain S-box-containing protein.
  
 
 0.746
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.