STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR79591.1V4R domain-containing protein. (179 aa)    
Predicted Functional Partners:
SIR79671.1
Electron transfer flavoprotein beta subunit.
 
    0.982
SIR79629.1
Fe-S oxidoreductase.
 
    0.973
SIR79568.1
Membrane dipeptidase.
 
  
 0.963
SIR79606.1
2,4-dienoyl-CoA reductase.
 
  
 0.962
SIR79523.1
Rieske 2Fe-2S family protein.
 
    0.939
SIR79265.1
Sarcosine oxidase subunit gamma.
 
    0.916
SIR79649.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
    0.914
SIR79228.1
Sarcosine oxidase subunit delta.
 
    0.901
SIR79247.1
Sarcosine oxidase subunit alpha.
 
    0.824
SIR79502.1
Ferredoxin-NADP reductase.
 
    0.809
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
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