STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR82240.1Ornithine decarboxylase. (752 aa)    
Predicted Functional Partners:
SIR42718.1
Arginine decarboxylase.
  
  
 
0.923
SpeB
Agmatinase; Belongs to the arginase family.
 
  
 0.919
RocF
Arginase; Belongs to the arginase family.
   
 0.908
argH
Argininosuccinate lyase.
     
 0.811
SIR82218.1
AraC-like ligand binding domain-containing protein.
  
    0.707
EarP
Conserved hypothetical protein, PP_1857 family.
  
     0.669
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.601
SIR82203.1
Permease of the drug/metabolite transporter (DMT) superfamily.
  
    0.574
SIQ72928.1
Spermidine synthase/S-adenosylmethionine decarboxylase.
  
  
 0.545
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.