STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR88019.1Hypothetical protein. (244 aa)    
Predicted Functional Partners:
SIQ69516.1
Two component transcriptional regulator, LuxR family.
 
 
 0.526
SIR73278.1
Two component transcriptional regulator, LuxR family.
 
 
 0.525
SIR25495.1
Amino acid adenylation domain-containing protein.
  
  
 0.511
SIR52058.1
Two-component system, NarL family, response regulator LiaR.
 
 
 0.474
SIQ70751.1
Two component transcriptional regulator, LuxR family.
 
 
 0.457
SIS03479.1
Two component transcriptional regulator, LuxR family.
 
 
 0.457
SIR57838.1
ABC-type amino acid transport substrate-binding protein.
 
 
 0.410
SIR96850.1
Two component transcriptional regulator, AraC family.
  
 
 0.407
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.