STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF92788.1Pilus assembly protein, PilO. (176 aa)    
Predicted Functional Partners:
SFF92759.1
Type IV pilus assembly protein PilM.
 
 
 0.988
SFF92776.1
Type IV pilus assembly protein PilN.
  
 
 0.985
SFF92658.1
Fimbrial assembly protein (PilN).
  
 
 0.961
SFF92818.1
Type IV pilus assembly protein PilQ.
 
   
 0.931
SFF92735.1
Type IV pilus assembly protein PilC.
 
 
 
 0.922
SFF92706.1
Type II secretion system protein E (GspE).
 
 
 0.893
SFF92639.1
Type IV pilus assembly protein PilM.
 
 
 0.834
SFF92746.1
RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family.
 
   
 0.827
SFF92559.1
Type IV pilus assembly protein PilC.
   
 
 0.759
SFF92544.1
Type II/IV secretion system protein.
  
 
 0.746
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.