STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG00484.1Ferredoxin. (62 aa)    
Predicted Functional Partners:
SFF93463.1
Oxaloacetate decarboxylase, alpha subunit.
     
 0.811
SFH18490.1
Biotin-requiring enzyme.
     
 0.726
SFH18511.1
Pyridine nucleotide-disulphide oxidoreductase.
     
 0.726
SFH18528.1
Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain.
     
 0.726
SFG25820.1
NADH-quinone oxidoreductase subunit F.
    
 0.679
SFG00054.1
NADH-quinone oxidoreductase subunit F.
    
 0.643
SFG01156.1
NADH-quinone oxidoreductase subunit F.
    
 0.643
SFG25043.1
Phosphoenolpyruvate carboxykinase (ATP); Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.
  
  
  0.615
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
     
 0.601
SFG69778.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
     
 0.600
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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