STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG01891.1Putative heme d1 biosynthesis radical SAM protein NirJ2. (329 aa)    
Predicted Functional Partners:
SFG01907.1
Transcriptional regulator, AsnC family.
 
 0.997
SFG01927.1
Transcriptional regulator, AsnC family.
 
 0.982
SFG01856.1
Putative heme d1 biosynthesis radical SAM protein NirJ1.
 
  
 
0.892
SFG01835.1
uroporphyrinogen-III synthase.
  
 0.842
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
 
 0.810
SFG01872.1
Porphobilinogen synthase; Belongs to the ALAD family.
     
 0.763
SFG13365.1
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
 
  
 
0.754
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
     
 0.700
SFH12146.1
Adenylate cyclase.
   
 
  0.677
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.650
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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