STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG09671.1Phage-related replication protein YjqB, UPF0714/DUF867 family. (246 aa)    
Predicted Functional Partners:
SFG09749.1
Poly-gamma-glutamate biosynthesis protein PgsC/CapC.
 
   
 0.801
SFG09774.1
Poly-gamma-glutamate synthase PgsB/CapB.
  
   
 0.783
SFG54885.1
Putative ABC transport system permease protein.
  
     0.725
SFG62910.1
Putative ABC transport system permease protein.
  
     0.709
SFG10243.1
Signal transduction histidine kinase.
  
     0.679
SFG16013.1
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
     0.596
SFG08520.1
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
     0.587
SFH12095.1
S-layer homology domain-containing protein.
  
     0.562
SFG34644.1
Iron complex transport system substrate-binding protein.
  
     0.547
SFG83448.1
MacB-like core domain-containing protein.
  
     0.533
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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