STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG23934.1Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (358 aa)    
Predicted Functional Partners:
SFG23956.1
Methyltransferase cognate corrinoid proteins.
 
 0.899
SFG01835.1
uroporphyrinogen-III synthase.
  
 
 0.889
SFG24061.1
[methyl-Co(III) methanol-specific corrinoid protein]:coenzyme M methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 
0.777
SFG23988.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
    0.774
SFG23808.1
Methanogenic corrinoid protein MtbC1.
 
 0.765
SFH04268.1
Methylamine methyltransferase corrinoid protein reductive activase.
 
    0.760
SFH04447.1
Methyltransferase cognate corrinoid proteins.
 
 0.758
SFH04461.1
Methyltransferase cognate corrinoid proteins.
 
 0.758
SFG24129.1
Hypothetical protein.
 
     0.729
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.728
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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