STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG44882.1Proline racemase; Belongs to the proline racemase family. (343 aa)    
Predicted Functional Partners:
SFH02617.1
Ornithine cyclodeaminase.
 
  
 0.880
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.695
SFH40043.1
Predicted aconitase subunit 2.
  
 
 0.608
SFH40057.1
Predicted aconitase subunit 1.
  
 
 0.608
SFG99088.1
Hypothetical protein.
    
 0.596
SFG44835.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.590
SFG44858.1
TRAP transporter, DctM subunit.
       0.590
SFG44902.1
Pyruvate formate lyase activating enzyme.
       0.568
SFG44928.1
Formate C-acetyltransferase.
       0.568
SFG93640.1
L-proline dehydrogenase.
    
 0.563
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.