Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFF97314.1 | SFG48342.1 | SAMN05660649_00275 | SAMN05660649_01790 | Pyruvate kinase; Belongs to the pyruvate kinase family. | LL-diaminopimelate aminotransferase. | 0.754 |
SFF97314.1 | SFG48370.1 | SAMN05660649_00275 | SAMN05660649_01791 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Hypothetical protein. | 0.641 |
SFF97314.1 | rny | SAMN05660649_00275 | SAMN05660649_01796 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Ribonucrease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.603 |
SFG48315.1 | SFG48342.1 | SAMN05660649_01789 | SAMN05660649_01790 | Hypothetical protein. | LL-diaminopimelate aminotransferase. | 0.569 |
SFG48315.1 | SFG48370.1 | SAMN05660649_01789 | SAMN05660649_01791 | Hypothetical protein. | Hypothetical protein. | 0.444 |
SFG48315.1 | SFG48399.1 | SAMN05660649_01789 | SAMN05660649_01792 | Hypothetical protein. | Membrane dipeptidase. | 0.459 |
SFG48342.1 | SFF97314.1 | SAMN05660649_01790 | SAMN05660649_00275 | LL-diaminopimelate aminotransferase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.754 |
SFG48342.1 | SFG48315.1 | SAMN05660649_01790 | SAMN05660649_01789 | LL-diaminopimelate aminotransferase. | Hypothetical protein. | 0.569 |
SFG48342.1 | SFG48370.1 | SAMN05660649_01790 | SAMN05660649_01791 | LL-diaminopimelate aminotransferase. | Hypothetical protein. | 0.550 |
SFG48342.1 | SFG48399.1 | SAMN05660649_01790 | SAMN05660649_01792 | LL-diaminopimelate aminotransferase. | Membrane dipeptidase. | 0.485 |
SFG48370.1 | SFF97314.1 | SAMN05660649_01791 | SAMN05660649_00275 | Hypothetical protein. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.641 |
SFG48370.1 | SFG48315.1 | SAMN05660649_01791 | SAMN05660649_01789 | Hypothetical protein. | Hypothetical protein. | 0.444 |
SFG48370.1 | SFG48342.1 | SAMN05660649_01791 | SAMN05660649_01790 | Hypothetical protein. | LL-diaminopimelate aminotransferase. | 0.550 |
SFG48370.1 | SFG48399.1 | SAMN05660649_01791 | SAMN05660649_01792 | Hypothetical protein. | Membrane dipeptidase. | 0.643 |
SFG48370.1 | SFG48429.1 | SAMN05660649_01791 | SAMN05660649_01793 | Hypothetical protein. | Stage V sporulation protein S. | 0.509 |
SFG48370.1 | SFG76726.1 | SAMN05660649_01791 | SAMN05660649_02634 | Hypothetical protein. | Ribonuclease G. | 0.414 |
SFG48370.1 | SFG83108.1 | SAMN05660649_01791 | SAMN05660649_02845 | Hypothetical protein. | alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase. | 0.667 |
SFG48370.1 | rbfA | SAMN05660649_01791 | SAMN05660649_01832 | Hypothetical protein. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.411 |
SFG48370.1 | rnc | SAMN05660649_01791 | SAMN05660649_01553 | Hypothetical protein. | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.785 |
SFG48370.1 | rny | SAMN05660649_01791 | SAMN05660649_01796 | Hypothetical protein. | Ribonucrease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.459 |
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