STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG49130.1Sporulation protein, YlmC/YmxH family. (89 aa)    
Predicted Functional Partners:
SFG48824.1
ATP-dependent protease ClpP, protease subunit.
 
     0.840
SFG49158.1
Hypothetical protein.
       0.795
SFG99920.1
Stage II sporulation protein R.
 
     0.780
SFF93303.1
Stage III sporulation protein AA.
  
    0.777
SFF93367.1
Stage III sporulation protein AD.
  
     0.773
SFF93345.1
Stage III sporulation protein AC.
  
     0.770
SFG39344.1
Sporulation integral membrane protein YlbJ.
  
     0.770
SFH06472.1
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
   
 0.770
SFH12554.1
Similar to stage IV sporulation protein.
  
     0.770
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.768
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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