STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG58867.1Urocanate hydratase. (56 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase.
 
 
 0.953
hutI
Imidazolonepropionase.
 
 
 0.945
hutI-2
Imidazolonepropionase.
 
 
 0.942
SFH39904.1
Urocanase.
 
     0.846
SFG30403.1
Urocanase.
 
     0.845
SFF98712.1
Imidazolonepropionase.
  
 
 0.756
SFG78810.1
Imidazolonepropionase.
  
 
 0.756
SFH09626.1
Imidazolonepropionase.
  
 
 0.756
SFG30334.1
Glutamate formiminotransferase.
 
    0.578
SFH39937.1
Glutamate formiminotransferase.
 
    0.576
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.