node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
hpf | rplI | SAMN05660649_02133 | SAMN05660649_03095 | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | 0.915 |
hpf | rplO | SAMN05660649_02133 | SAMN05660649_03304 | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.915 |
hpf | rpmA | SAMN05660649_02133 | SAMN05660649_02636 | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.924 |
hpf | rpmC | SAMN05660649_02133 | SAMN05660649_03294 | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.961 |
hpf | rpsD | SAMN05660649_02133 | SAMN05660649_03311 | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.916 |
hpf | rpsE | SAMN05660649_02133 | SAMN05660649_03302 | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.915 |
hpf | rpsI | SAMN05660649_02133 | SAMN05660649_03319 | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.921 |
hpf | rpsL | SAMN05660649_02133 | SAMN05660649_05061 | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.913 |
hpf | rpsP | SAMN05660649_02133 | SAMN05660649_01567 | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.915 |
hpf | rpsU | SAMN05660649_02133 | SAMN05660649_03979 | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.928 |
rplI | hpf | SAMN05660649_03095 | SAMN05660649_02133 | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.915 |
rplI | rplO | SAMN05660649_03095 | SAMN05660649_03304 | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | Large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.989 |
rplI | rpmA | SAMN05660649_03095 | SAMN05660649_02636 | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.992 |
rplI | rpmC | SAMN05660649_03095 | SAMN05660649_03294 | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.988 |
rplI | rpsD | SAMN05660649_03095 | SAMN05660649_03311 | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.990 |
rplI | rpsE | SAMN05660649_03095 | SAMN05660649_03302 | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.987 |
rplI | rpsI | SAMN05660649_03095 | SAMN05660649_03319 | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.990 |
rplI | rpsL | SAMN05660649_03095 | SAMN05660649_05061 | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.985 |
rplI | rpsP | SAMN05660649_03095 | SAMN05660649_01567 | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.989 |
rplI | rpsU | SAMN05660649_03095 | SAMN05660649_03979 | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.975 |