STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG63505.1Putative variant cofactor biosynthesis B12-binding domain/radical SAM domain protein 1. (441 aa)    
Predicted Functional Partners:
SFG63526.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
 
  
  0.991
SFG63482.1
Predicted metal-binding protein.
 
     0.949
cobT
Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
 
     0.833
SFG63546.1
Phosphomethylpyrimidine synthase.
       0.636
SFG63564.1
Hydroxymethylpyrimidine synthase.
       0.565
SFG00594.1
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
  
 
 0.551
SFH15584.1
Coenzyme F420 hydrogenase subunit beta.
  
  
  0.512
SFG58751.1
O-methyltransferase.
  
 
 0.483
SFG24149.1
Protein of unknown function.
  
     0.474
SFG63439.1
H+/Cl-antiporter ClcA.
  
    0.450
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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