STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG75853.1Spore germination protein KA. (590 aa)    
Predicted Functional Partners:
SFG75892.1
Spore germination B3/ GerAC like, C-terminal.
 
  
 0.957
SFG75875.1
Spore germination protein (amino acid permease).
 
  
 0.956
SFH11833.1
Spore germination protein KC.
  
 0.830
SFH11814.1
Spore germination protein KB.
 
  
 0.809
SFG75618.1
Spore germination protein KB.
 
  
 0.808
SFH29330.1
Stage V sporulation protein AD.
  
  
 0.805
SFG08180.1
Spore germination protein KC.
  
 0.800
SFH29347.1
Stage V sporulation protein AC.
  
  
 0.792
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.791
SFG99920.1
Stage II sporulation protein R.
 
    0.791
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.