Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFG14310.1 | SFG45969.1 | SAMN05660649_00852 | SAMN05660649_01698 | Putative selenium metabolism hydrolase. | Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03. | 0.509 |
SFG14310.1 | SFG84573.1 | SAMN05660649_00852 | SAMN05660649_02915 | Putative selenium metabolism hydrolase. | Cystathionine gamma-synthase. | 0.422 |
SFG14310.1 | SFG84650.1 | SAMN05660649_00852 | SAMN05660649_02918 | Putative selenium metabolism hydrolase. | Amidohydrolase. | 0.613 |
SFG14310.1 | dapF | SAMN05660649_00852 | SAMN05660649_01418 | Putative selenium metabolism hydrolase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.691 |
SFG14310.1 | dapF-2 | SAMN05660649_00852 | SAMN05660649_03200 | Putative selenium metabolism hydrolase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.691 |
SFG14310.1 | dapL | SAMN05660649_00852 | SAMN05660649_01419 | Putative selenium metabolism hydrolase. | LL-diaminopimelate aminotransferase apoenzyme; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.662 |
SFG40854.1 | SFG45969.1 | SAMN05660649_01599 | SAMN05660649_01698 | GXGXG motif-containing protein. | Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03. | 0.816 |
SFG40854.1 | SFG84621.1 | SAMN05660649_01599 | SAMN05660649_02917 | GXGXG motif-containing protein. | Glutamine synthetase. | 0.807 |
SFG40854.1 | SFG84650.1 | SAMN05660649_01599 | SAMN05660649_02918 | GXGXG motif-containing protein. | Amidohydrolase. | 0.629 |
SFG40854.1 | dapF | SAMN05660649_01599 | SAMN05660649_01418 | GXGXG motif-containing protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.793 |
SFG40854.1 | dapF-2 | SAMN05660649_01599 | SAMN05660649_03200 | GXGXG motif-containing protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.793 |
SFG40854.1 | dapL | SAMN05660649_01599 | SAMN05660649_01419 | GXGXG motif-containing protein. | LL-diaminopimelate aminotransferase apoenzyme; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.693 |
SFG45969.1 | SFG14310.1 | SAMN05660649_01698 | SAMN05660649_00852 | Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03. | Putative selenium metabolism hydrolase. | 0.509 |
SFG45969.1 | SFG40854.1 | SAMN05660649_01698 | SAMN05660649_01599 | Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03. | GXGXG motif-containing protein. | 0.816 |
SFG45969.1 | SFG84621.1 | SAMN05660649_01698 | SAMN05660649_02917 | Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03. | Glutamine synthetase. | 0.658 |
SFG45969.1 | SFG84650.1 | SAMN05660649_01698 | SAMN05660649_02918 | Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03. | Amidohydrolase. | 0.587 |
SFG84573.1 | SFG14310.1 | SAMN05660649_02915 | SAMN05660649_00852 | Cystathionine gamma-synthase. | Putative selenium metabolism hydrolase. | 0.422 |
SFG84573.1 | SFG84595.1 | SAMN05660649_02915 | SAMN05660649_02916 | Cystathionine gamma-synthase. | Amidohydrolase. | 0.462 |
SFG84573.1 | SFG84621.1 | SAMN05660649_02915 | SAMN05660649_02917 | Cystathionine gamma-synthase. | Glutamine synthetase. | 0.505 |
SFG84573.1 | SFG84650.1 | SAMN05660649_02915 | SAMN05660649_02918 | Cystathionine gamma-synthase. | Amidohydrolase. | 0.558 |
page 1 of 3