STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG88391.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (467 aa)    
Predicted Functional Partners:
SFF96368.1
Flagellar motor switch protein FliN/FliY.
   
   0.788
SFH34984.1
Penicillin-binding protein 1A.
  
   
 0.670
SFG84907.1
Penicillin-binding protein 2A.
  
   
 0.582
SFG88412.1
Uncharacterized protein.
       0.528
SFG61997.1
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.505
SFG99046.1
Protein of unknown function.
 
  
 0.468
SFG88368.1
Tetratricopeptide repeat-containing protein.
       0.463
SFH09391.1
Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
  
    0.459
SFG88497.1
Serine protease AprX; Belongs to the peptidase S8 family.
 
  
 0.449
SFG88438.1
Six-cysteine peptide SCIFF.
       0.446
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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