STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG88946.1Hypothetical protein. (188 aa)    
Predicted Functional Partners:
SFF96368.1
Flagellar motor switch protein FliN/FliY.
   
   0.788
SFG89000.1
Heparinase II/III N-terminus.
       0.647
SFG88971.1
Succinoglycan biosynthesis protein ExoL.
       0.639
SFG89023.1
O-antigen ligase.
       0.592
SFH09391.1
Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
  
    0.459
SFG89044.1
Putative peptidoglycan binding domain-containing protein.
     
 0.458
SFF94995.1
Cell wall-associated hydrolase, NlpC family.
  
 
 0.438
SFH25147.1
LysM domain-containing protein.
  
 
 0.438
SFG88924.1
Hypothetical protein.
       0.437
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.