STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG90223.1Uncharacterized membrane protein YkvI. (365 aa)    
Predicted Functional Partners:
SFG90247.1
Putative sporulation protein YyaC.
 
    0.743
SFH35174.1
Putative sporulation protein YtxC.
 
     0.714
SFG90210.1
Colicin V production protein.
       0.686
SFG75892.1
Spore germination B3/ GerAC like, C-terminal.
  
    0.613
SFG75875.1
Spore germination protein (amino acid permease).
  
     0.566
SFG90188.1
Aspartyl aminopeptidase.
       0.563
SFF93387.1
Stage III sporulation protein AE.
  
    0.549
SFH00052.1
Stage II sporulation protein E.
  
     0.540
SFF94136.1
Stage II sporulation protein M.
  
    0.503
SFF93325.1
Stage III sporulation protein AB.
  
    0.485
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.