STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG99867.1Sporulation protein YabP. (127 aa)    
Predicted Functional Partners:
SFG99900.1
Spore cortex biosynthesis protein YabQ.
 
  
 0.973
SFF93345.1
Stage III sporulation protein AC.
  
  
 0.857
SFG99846.1
Stage II sporulation protein D.
 
   
 0.819
SFH12554.1
Similar to stage IV sporulation protein.
 
   
 0.808
SFF93387.1
Stage III sporulation protein AE.
  
    0.785
SFF93325.1
Stage III sporulation protein AB.
  
   
 0.770
SFG28951.1
Stage II sporulation protein GA (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.766
SFG39344.1
Sporulation integral membrane protein YlbJ.
 
   
 0.763
SFF93367.1
Stage III sporulation protein AD.
  
    0.715
SFG29066.1
Sporulation protein, YlmC/YmxH family.
  
     0.713
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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